Bioinformatics tools for Mac OS

  • Clustal X - Multiple alignment of nucleic acid and protein sequences
  • Fraise - Powerful lightweight text editor
  • Utopia - A collection of interactive tools for analysing protein sequence and structure
  • CINEMA - Colour INteractive Editor for Multiple Alignments
  • Ambrosia - Molecular Structure Viewer
  • iRNAi - Dealing with RNAi
  • TargetScanner - Predict microRNA target genes
  • Papers - Your personal library of research
  • PubSearch - Fast, efficient PubMed® searching on your Mac and your iPhone / iPod Touch
  • EnzymeX - to cur or not to cut; DNA editing
  • 4Peaks - For viewing and editing sequence trace files
  • R Bioconductor - A language and environment for statistical computing and graphics
  • UGENE - Integrated Bioinformatics Tools
  • Gene Pattern - A powerful genomic analysis platform that provides access to more than 100 tools for gene expression analysis, proteomics, SNP analysis and common data processing tasks
  • HMMEditor - A visual editor for profile Hidden Markov Model (pHMM)
  • Weka - A collection of machine learning algorithms for data mining tasks
  • Graphviz - Representing structural information as diagrams of abstract graphs and networks
  • Cytoscape - For visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.
  • Plot - A scientific 2D plotting program.
  • eBioX - provides an easy-to-use user interface for the eBioTools package
  • eBioTools - a collection of more than 300 bioinformatics tools/programs, including
  1. Boost v1.3.41
  2. Clustal W v1.83.UNIX
  3. PHYLIP v3.6b
  4. EMBOSS v5.0.0
  5. EMBOSS.kaptain v0.98
  6. gd v2.0.35
  7. Glimmer v3.02
  8. HMMER v2.3.2
  9. INFERNAL v0.7
  10. Jmol v11.2.12
  11. Kalign v2
  12. Kaptain v0.72
  13. MrBayes v3.1.2
  14. MRS cust vr482
  15. MUSCLE v3.6
  16. NCBI Tools v2.2.16
  17. NEdit v5.5
  18. Primer3 v1.1.2
  19. sim4 v2003-09-21
  20. soap4r v1.5.8
  21. Staden v1.7.0
  22. T-COFFEE v5.05
  23. ViennaRNA v1.6.5

1 comment:

Calzavara said...

Dear Asif, thanks for remember of mac lovers!