Bioinformatics Web Servers

• FaBox - an online fasta sequence toolbox
• PPI-Pred - Protein Protein Interface Prediction
• FRpred - Collection of methods for the prediction of functional residues in protein multiple sequence alignments
• PROCHECK - Checks the stereochemical quality of a protein structure
• Quick2D - Gives an overview of secondary structure of a protein or alignment
• Ali2D - Plots secondary structure and transmembrane regions on an alignment
• CD-Search - Search for Conserved Domains
• MEME - Multiple EM for Motif Elicitation
• Mobyle - An integrated portal for diverse type of sophisticated bioinformatics analyses (highly recommended)
  
• RevTrans - Multiple Alignment Of Coding DNA From Aligned Amino Acid Sequences
• GoPubmed - Search Pubmed And Get Results Sorted Out "GO" and "MESH"
• Blast@BIC
• Blast@NCBI
• ClustalW@BIC
• ClustalW@EBI
• Promals - PROfile Multiple Alignment with Local Structure
• Promals3D - Profile multiple alignment using information from sequence database searches, secondary structure prediction, available homologs with 3D structures and user-defined constraints (better than Promals)
  
• CysView - Disulfide Connectivity Analyzer
• WEMBOSS@BIC, Singapore
  
• WEMBOSS@SBRC, Singapore
  
• WEMBOSS@University of Pretoria, South Africa
  
• WEMBOSS@Washington State University, USA
  
• WEMBOSS@Weizmann Institute Server, Israel
  
• WEMBOSS@St. Louis University Server, USA
  
• WEMBOSS@Toulouse Bioinformatics Server, France
  
• WEMBOSS@Wageningen University Server, Netherland
  
• JEMBOSS@BIC, Singapore
  
• Entrez Tools to Retrieve Data from NCBI
• NCBI Tools For Bioinformatics Research
• Swiss-Model - An Automated Comparative Protein Modelling Server
• ModWeb - A Server for Protein Structure Modeling
• ModLoop - Modeling of loops in protein structures
• WHATIF, PROCHECK, VERIFY3D, ERRAT - 3D Model quality check tools
• SUPERPOSE - Quantitative comparison of model with experimental structure
• RExPrimer - is an integrated web-based application for primer design
• Post translation prediction Web-servers/tools 1
• Post translation prediction Web-servers/tools 2 (and other tools)
• Glyco - Glycosylation predictor
• NetNGlyc - N-glycosylation predictor
• EnsembleGly - Glycosylation predictor
• Prosite - Post translation predictor
• Annie - Protein Sequence Annotation and Interpretation Environment