3D Structure Modelling and Docking Suite Software and Tools

Commercial:

• Schrodinger - Maestro- can get 15 days trial for all modules
  
• Discovery studio - can get 1 to 2 months trial
  
• MOE (Molecular Operating Environment)
  
• SYBYL
  
• FLEX-X - can get trial version
  
• GOLD
  
• ICM DOCKING - can get trial version

Non-commercial (free):

• Autodock vina /version4.0
  
• DOCK6
  
• PATCHDOCK - Online docking server
  
• Argus lab
  
• CLUSPRO - Protein protein docking
• ZDOCK - Fast Fourier Transform based protein docking program
• DOT - Macromolecular docking software
• GRAMM-X - Protein-protein docking Web server
• HADDOCK - Data-driven biomolecular docking (protocol)
• Modeller - Free 3D Modelling Software (tutorial)
• SWISS-MODEL - Fully automated protein structure homology-modeling server