Gene Prediction Programs

References

• PMID: 19494180
  
• PMID: 18087260
• PMID: 12209144

Comparative Genomics

• Doublescan
  
• SLAM
  
• Twinscan

Homology Searching Capabilities

• GeneMachine
• Genscan
• GenomeScan
• Fgenesh, Fgenes-M,TSSW,TSSG,Polyah, SPL and
  RNASPL
• Fgenesh, Fgenes-M, SPL and RNASPL
• HMMgene
• Genie
• GRAIL
• GeneMark
• GeneID
• GeneParser
• MZEF and POMBE
• AAT,MZEF with homology
• MZEF with SpliceProximalCheck
• Genesplicer,Glimmer and GlimmerM
• WebGene
• GenLang
• Xpound

Alignment based

• Procrustes
• GeneWise2
• SplicePredictor
• PredictGenes

Ab initio

• Augustus